Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015856715.1_cds_XP_016513232.1_25793
CDS Infomation

[gene=LOC107830244] [db_xref=GeneID:107830244] [protein=probable polygalacturonase] [protein_id=XP_016513232.1] [location=join(40644..41099,42152..42272,44177..44351,44793..44863,45176..45810)] [gbkey=CDS]
Sequence

ATGGAAGGACAAAACCAGATATTGATCAACAGAATCAAGGGAAACTTAAGAAGGCCTTCA
TGGGCATCTCTGCTGCTTCTATTCACAGTCATCGCTCTAATTAGCCTCCTACAGATCAAC
AGGGAATATTCAATCAGCTTGTTGATCCCCTTGGATTTCGGATTAATCTCGGGCTCTCGG
TCCGGCCCTCAGATGAGCAGCAGCTGCTCTGACTTCTTCAAGCAGGTACCGGCAAGGAAG
GTGGTGAAGTCGATCAGGGATTTCGGCGGGATTGGGGATGGCAAAACCTCAAACACGGAT
GCATTTCAACGGGCCATGGAATTTATGGCACGTTTCACGGATAGTGGTGGGTCCCAGCTA
GTTGTTCCCAAAGGCAGGTGGCTTACGGGAAGTTTCAATCTCACTAGCAATTTCACCCTC
TTCCTCGAACAAGGCGCTAGCATCTTGGGCTCTCAGGATCCAAAGGAATGGCCATTAATC
AATGCTCTGCCTTCATATGGAAGAGGGAGAGAAAGGCTTGGAGCGAGACATATTAGCCTC
ATCCATGGAAATGGTCTCACCAATGTTGTAATTACAGGGGAAAATGGAACTGTAGATGGT
CAGGGAAAGATGTGGTGGGAGCTTTGGTGGAATAGAACACTGGTCCACACCAGAGGCCAT
CTCGTTGAGCTGATTAACTCCCAGAACATCCTGATCCATAATCTTACATTCCTCAACTCC
CCGTTTTGGACAATTCATCCTGTCTATTGCAGGAATATTGTAATCAGAAATATGACTATT
TTGGCTCCTTGGAATGCCCCTAACACAGATGGCATAGACCCAGACTCCAGCGTGAATGTG
TGCATCGAAGATTGTTACATCGAAAGTGGTGATGACCTTGTAGCAGTGAAAAGTGGTTGG
GACCAGTACGGCGTGAAAATGGCTCGTCCAAGCTCAAATGTCATTGTAAGGAGAGTGACT
GGCACAACTCCAACATGTTCAGGAGTTGGTATTGGCAGTGAGATGTCTGGAGGTGTTTCT
AATGTCATCATAGAAGACTTATATGTTAGAGATTCAGCAGCTGGCGTGCGGATTAAAACT
GATAGAGGAAGAGGTGGATACATTACCAACATTACGATAAATAACATGAAAATGGAAAGA
GTGAAAGTGCCGATTAGGTTTAGCAGGGGAGCGAATGACCACCCCGACGAGAGATGGGAT
CCGAAAGCAGTACCTAAAGTAAGAGGTATTCGTATCAGTAACGTGGTCAGTCTGGAATCA
AAGAGACCGCCCTTGCTAGAGGGCATTGAGGAAGCACCATTTTTGGACATACACATGGAA
AACATAAGTATATTTGGGCTAGCCCCAACTATGAGGTGGAACTGTGAATTTATCTCTGGT
TCTAGCTGCAGTATTTTCCCTGCACCCTGTTCCCAATTGCTGAAGAATGAATCCACATTT
CAGTGTTCAATTCATTAG

Peptide Sequence

PEP ID

XP_016513232.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MEGQNQILINRIKGNLRRPSWASLLLLFTVIALISLLQINREYSISLLIPLDFGLISGSR
SGPQMSSSCSDFFKQVPARKVVKSIRDFGGIGDGKTSNTDAFQRAMEFMARFTDSGGSQL
VVPKGRWLTGSFNLTSNFTLFLEQGASILGSQDPKEWPLINALPSYGRGRERLGARHISL
IHGNGLTNVVITGENGTVDGQGKMWWELWWNRTLVHTRGHLVELINSQNILIHNLTFLNS
PFWTIHPVYCRNIVIRNMTILAPWNAPNTDGIDPDSSVNVCIEDCYIESGDDLVAVKSGW
DQYGVKMARPSSNVIVRRVTGTTPTCSGVGIGSEMSGGVSNVIIEDLYVRDSAAGVRIKT
DRGRGGYITNITINNMKMERVKVPIRFSRGANDHPDERWDPKAVPKVRGIRISNVVSLES
KRPPLLEGIEEAPFLDIHMENISIFGLAPTMRWNCEFISGSSCSIFPAPCSQLLKNESTF
QCSIH

Transcript Sequence

Gene sequence data has not been registered.